SMTL ID : 6bek.2 (1 other biounit)

Structure of sIHF bound to an 8bp palindromic DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x DC- DA- DT- DG- DC- DA- DT- DG: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3')(Non-covalent)

DC-DA-DT-DG-DC-DA-DT-DG.1: 10 residues within 4Å: Chain A: R.88, G.89 Ligands: DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2 Protein-ligand interaction information (PLIP) not available DC-DA-DT-DG-DC-DA-DT-DG.2: 16 residues within 4Å: Chain A: I.81, S.82, S.84, R.85, G.91, S.92, N.93, Q.94 Ligands: DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1 Protein-ligand interaction information (PLIP) not available

1 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: E.62, S.63, L.64, V.67 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.62, A:L.64, A:V.67, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nanji, T. et al., Streptomyces IHF uses multiple interfaces to bind DNA. Biochim Biophys Acta Gen Subj (2019)

Release Date

2018-10-31

Peptides

SCO1480: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

SCO1480

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