SMTL ID : 6bfm.1

Galactose-binding Lectin from Mytilus californianus, Isoform1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: E.76, H.109, P.110, K.111, G.112, G.113, V.124, H.126, H.130 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.109, A:P.110, A:G.112, A:H.130 Water bridges: A:H.130 GOL.2: 9 residues within 4Å: Chain A: H.17, P.18, K.19, G.20, G.21, V.32, H.34, H.38, E.120 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.17, A:P.18, A:G.20, A:H.38, A:E.120 GOL.3: 10 residues within 4Å: Chain A: D.28, H.65, P.66, L.67, G.68, G.69, V.80, H.82, D.84, H.86 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.66, A:G.68, A:H.86 Water bridges: A:G.68, A:R.88, A:R.88 GOL.4: 2 residues within 4Å: Chain A: S.35, D.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.35, A:S.35, A:D.36 GOL.7: 9 residues within 4Å: Chain B: E.76, H.109, P.110, K.111, G.112, G.113, V.124, H.126, H.130 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.110, B:G.112, B:H.130 Water bridges: B:G.112 GOL.8: 9 residues within 4Å: Chain B: H.17, P.18, K.19, G.20, G.21, V.32, H.34, H.38, E.120 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.18, B:G.20, B:H.38 Water bridges: B:E.120, B:E.120 GOL.9: 8 residues within 4Å: Chain B: D.28, H.65, L.67, G.68, G.69, H.82, D.84, H.86 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.28, B:H.65, B:G.68, B:G.69, B:D.84 GOL.10: 2 residues within 4Å: Chain B: K.10, R.146 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.10, B:R.146 Water bridges: B:R.146 GOL.11: 3 residues within 4Å: Chain A: R.146 Chain B: R.51, W.52 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:R.146, A:R.146, A:R.146, B:W.52, B:W.52

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 2 residues within 4Å: Chain A: H.86, R.88 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.86, A:R.88

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: N.27, H.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Maldonado, E. et al., Glycan-induced oligomerization of a lectin from Mytilus californianus. To Be Published

Release Date

2019-01-30

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin