SMTL ID : 6bfo.1

Caspase-3 Mutant- T245D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACE- ASP- GLU- VAL- ASP- 0QE: AC-ASP-GLU-VAL-ASP-CMK(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 16 residues within 4Å: Chain A: R.64, S.120, H.121, G.122, Q.161, C.163 Chain B: Y.29, S.30, W.31, R.32, N.33, S.34, W.39, E.73, S.74, F.75 2 PLIP interactions: 1 Ligand-Ligand interactions, 1 interactions with chain B Hydrophobic interactions: D.0 Hydrogen bonds: B:S.34 Water bridges: E.0

11 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: Q.161 Chain B: S.30, W.31, S.38, W.39, F.40, Q.86 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:Q.161, B:W.31, B:W.39, B:F.40, B:Q.86, B:Q.86 NA.3: 5 residues within 4Å: Chain A: R.64, T.67, D.70, L.119, Q.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:T.67, A:T.67 NA.4: 7 residues within 4Å: Chain A: F.143, R.144, G.145, C.148, L.151, T.152, K.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.156 NA.5: 6 residues within 4Å: Chain A: I.160, A.162, R.164 Chain B: Y.22, S.23, T.24 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.160, A:A.162, B:S.23, B:T.24 NA.8: 7 residues within 4Å: Chain A: T.152, G.153, K.156 Chain B: I.12, A.16, D.17 Ligands: NA.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.153, A:K.156, A:K.156 NA.9: 6 residues within 4Å: Chain B: A.21, Y.22, F.40, C.89, I.90 Ligands: NA.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.22, B:C.89 NA.10: 6 residues within 4Å: Chain B: W.39, V.68, A.69, F.72, K.85, Q.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.85, B:Q.86 NA.11: 3 residues within 4Å: Chain B: M.58, S.92, L.94 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.92, B:S.92 NA.12: 6 residues within 4Å: Chain A: G.145 Chain B: I.12, P.13, V.14, A.16 Ligands: NA.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.16, B:A.16, A:G.145 NA.13: 7 residues within 4Å: Chain B: F.40, L.61, V.64, N.65, P.88, I.90 Ligands: NA.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.65, B:N.65 NA.14: 5 residues within 4Å: Chain A: L.168, D.169 Chain B: W.31, K.84, K.85 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.85, A:D.169, A:D.169

2 x AZI: AZIDE ION(Non-covalent)

AZI.6: 5 residues within 4Å: Chain A: K.53, G.66, T.67, D.68, V.69 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.66, A:G.66, A:D.68, A:D.68, A:D.68, A:V.69 Water bridges: A:D.68 AZI.7: 3 residues within 4Å: Chain A: T.92, E.94, E.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.92, A:T.92, A:E.94, A:N.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, M.E. et al., Modifications to a common phosphorylation network provide individualized control in caspases. J. Biol. Chem. (2018)

Release Date

2018-02-21

Peptides

Caspase-3: A
Caspase-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Caspase-3

Caspase-3

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