SMTL ID : 6bgk.2 (1 other biounit)

Caspase-3 Mutant- D9A,D28A,T152D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACE- ASP- GLU- VAL- ASP- 0QE: ACE-ASP-GLU-VAL-ASP-0QE(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 16 residues within 4Å: Chain A: R.64, S.120, H.121, G.122, Q.161, C.163 Chain B: Y.29, S.30, W.31, R.32, N.33, S.34, W.39, E.73, S.74, F.75 3 PLIP interactions: 1 Ligand-Ligand interactions, 2 interactions with chain B Hydrophobic interactions: D.0 Hydrogen bonds: B:S.34 Water bridges: B:S.34

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: K.53, G.66, T.67, D.68 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: L.151, D.152, G.153, K.156 Chain B: I.12, A.16, D.17 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: F.143, R.144, G.145, C.148, L.151, D.152, K.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.151 NA.4: 5 residues within 4Å: Chain A: R.64, T.67, D.70, L.119, Q.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:D.70 NA.5: 7 residues within 4Å: Chain A: Q.161 Chain B: S.30, W.31, S.38, W.39, F.40, Q.86 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.31, B:W.31, B:W.39, B:F.40, B:Q.86, A:Q.161

1 x AZI: AZIDE ION(Non-covalent)

AZI.7: 2 residues within 4Å: Chain B: R.63, R.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.66 Water bridges: B:R.63, B:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, M.E. et al., Modifications to a common phosphorylation network provide individualized control in caspases. J. Biol. Chem. (2018)

Release Date

2018-02-21

Peptides

Caspase-3: A
Caspase-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Caspase-3

Caspase-3

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