SMTL ID : 6bhg.1

Crystal structure of SETDB1 with a modified H3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

hetero-1-1-mer

Ligands

40 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 3 residues within 4Å: Chain A: K.44, H.81, Y.140 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: S.72, N.74 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: Y.88, V.89 Ligand excluded by PLIP UNX.4: 2 residues within 4Å: Chain A: Y.88, S.91 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: F.126, D.127, C.158, I.162 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: L.146, K.147 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: E.163, T.167 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: K.148, E.163 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: D.24, Y.59, R.144 Ligand excluded by PLIP UNX.10: 6 residues within 4Å: Chain A: A.168, N.171, R.172 Ligands: UNX.11, UNX.12, UNX.27 Ligand excluded by PLIP UNX.11: 4 residues within 4Å: Chain A: E.164, A.168 Ligands: UNX.10, UNX.12 Ligand excluded by PLIP UNX.12: 6 residues within 4Å: Chain A: F.161, E.164, Y.165 Ligands: UNX.10, UNX.11, UNX.13 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: F.161, G.220 Ligands: UNX.12 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain A: W.192, K.193, D.210 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: L.71, S.72, H.75 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: D.128, G.129 Chain B: G.11 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: R.32, D.79 Ligands: UNX.30 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain A: I.183, K.184, E.225 Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain A: K.119, R.121 Ligands: UNX.20 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: T.135 Ligands: UNX.19 Ligand excluded by PLIP UNX.21: 1 residues within 4Å: Chain A: R.195 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: H.43, K.44 Ligand excluded by PLIP UNX.23: 3 residues within 4Å: Chain A: K.36, H.75, D.152 Ligand excluded by PLIP UNX.24: 4 residues within 4Å: Chain A: W.187, W.192, D.211 Ligands: UNX.28 Ligand excluded by PLIP UNX.25: 3 residues within 4Å: Chain A: L.21, S.22, K.23 Ligand excluded by PLIP UNX.26: 1 residues within 4Å: Chain A: E.164 Ligand excluded by PLIP UNX.27: 5 residues within 4Å: Chain A: Y.165, Y.169, N.171, R.172 Ligands: UNX.10 Ligand excluded by PLIP UNX.28: 2 residues within 4Å: Chain A: W.187 Ligands: UNX.24 Ligand excluded by PLIP UNX.29: 2 residues within 4Å: Chain A: S.233, S.234 Ligand excluded by PLIP UNX.30: 4 residues within 4Å: Chain A: R.32, K.44, D.79 Ligands: UNX.17 Ligand excluded by PLIP UNX.31: 1 residues within 4Å: Chain A: I.48 Ligand excluded by PLIP UNX.32: 4 residues within 4Å: Chain A: Y.130, A.131, S.132, W.216 Ligand excluded by PLIP UNX.33: 2 residues within 4Å: Chain A: Y.80, H.81 Ligand excluded by PLIP UNX.34: 1 residues within 4Å: Chain A: P.226 Ligand excluded by PLIP UNX.35: 3 residues within 4Å: Chain A: V.166, T.167, Y.169 Ligand excluded by PLIP UNX.36: 2 residues within 4Å: Chain A: I.156, D.160 Ligand excluded by PLIP UNX.37: 3 residues within 4Å: Chain A: V.199, D.200, G.201 Ligand excluded by PLIP UNX.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.39: 2 residues within 4Å: Chain A: W.150, T.167 Ligand excluded by PLIP UNX.40: 2 residues within 4Å: Chain A: L.209, K.212 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jurkowska, R.Z. et al., H3K14ac is linked to methylation of H3K9 by the triple Tudor domain of SETDB1. Nat Commun (2017)

Release Date

2017-12-06

Peptides

Histone-lysine N-methyltransferase SETDB1: A
Histone H3.1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETDB1

Histone H3.1

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