SMTL ID : 6bhi.1

Crystal structure of SETDB1 with a modified H3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

35 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 5 residues within 4Å: Chain A: Y.165, A.168, Y.169, N.171, R.172 Ligand excluded by PLIP UNX.2: 5 residues within 4Å: Chain A: F.126, D.127, C.158, I.162 Ligands: UNX.22 Ligand excluded by PLIP UNX.3: 1 residues within 4Å: Chain A: V.116 Ligand excluded by PLIP UNX.4: 2 residues within 4Å: Chain A: H.43, K.44 Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: K.37, R.38 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: Y.80, H.81 Ligand excluded by PLIP UNX.7: 6 residues within 4Å: Chain A: P.82, P.83, D.85, K.86, L.87, F.122 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: Y.88, V.89 Ligand excluded by PLIP UNX.9: 5 residues within 4Å: Chain A: E.112, T.113, N.115, Y.169 Ligands: UNX.10 Ligand excluded by PLIP UNX.10: 4 residues within 4Å: Chain A: T.113, P.114, N.115 Ligands: UNX.9 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: L.146, K.147 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain A: W.150, E.151, R.159 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain A: K.37, T.39 Ligand excluded by PLIP UNX.14: 6 residues within 4Å: Chain A: E.186, A.187, E.188, R.223 Chain B: G.9, R.14 Ligand excluded by PLIP UNX.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.16: 6 residues within 4Å: Chain A: L.182, I.183, K.193, S.194, L.209 Ligands: UNX.17 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: I.183, K.184 Ligands: UNX.16 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain A: R.205 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: F.161, E.164 Ligand excluded by PLIP UNX.20: 3 residues within 4Å: Chain A: K.36, K.40, E.154 Ligand excluded by PLIP UNX.21: 4 residues within 4Å: Chain A: Y.130, A.131, S.132, W.216 Ligand excluded by PLIP UNX.22: 6 residues within 4Å: Chain A: F.125, F.126, G.129, Y.130 Chain B: K.11 Ligands: UNX.2 Ligand excluded by PLIP UNX.23: 4 residues within 4Å: Chain A: E.20, A.49, I.50, Q.51 Ligand excluded by PLIP UNX.24: 2 residues within 4Å: Chain A: K.117 Ligands: UNX.25 Ligand excluded by PLIP UNX.25: 2 residues within 4Å: Chain A: K.117 Ligands: UNX.24 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain A: S.72, N.74 Ligands: UNX.27 Ligand excluded by PLIP UNX.27: 2 residues within 4Å: Chain A: L.146 Ligands: UNX.26 Ligand excluded by PLIP UNX.28: 3 residues within 4Å: Chain A: S.179, E.197, E.198 Ligand excluded by PLIP UNX.29: 2 residues within 4Å: Chain A: K.178, S.179 Ligand excluded by PLIP UNX.30: 4 residues within 4Å: Chain A: D.128, G.129, C.158 Chain B: G.10 Ligand excluded by PLIP UNX.31: 1 residues within 4Å: Chain A: K.212 Ligand excluded by PLIP UNX.32: 2 residues within 4Å: Chain A: I.48 Ligands: UNX.33 Ligand excluded by PLIP UNX.33: 2 residues within 4Å: Chain A: I.48 Ligands: UNX.32 Ligand excluded by PLIP UNX.34: 1 residues within 4Å: Chain A: E.225 Ligand excluded by PLIP UNX.35: 3 residues within 4Å: Chain A: T.222, F.228 Chain B: P.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jurkowska, R.Z. et al., H3K14ac is linked to methylation of H3K9 by the triple Tudor domain of SETDB1. Nat Commun (2017)

Release Date

2017-12-06

Peptides

Histone-lysine N-methyltransferase SETDB1: A
Histone H3.1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETDB1

Histone H3.1

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