SMTL ID : 6bhq.1

Mouse Immunoglobulin G 2c Fc fragment with complex-type glycan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.1: 13 residues within 4Å: Chain A: F.18, F.20, P.21, P.22, K.23, M.35, T.37, V.41, D.42, Y.73, N.74, T.76, R.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.73, A:F.20, A:K.23, A:M.35, A:M.35, A:T.37, A:T.37 Water bridges: A:D.26, A:M.35, A:T.37 NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.2: 11 residues within 4Å: Chain B: F.18, F.20, P.21, P.22, K.23, D.26, M.35, T.37, V.39, E.71, Y.73 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.20, B:K.23, B:K.23, B:D.26, B:M.35, B:M.35

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.115, P.116, R.117, G.118, E.207 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.115, A:G.118 Water bridges: A:K.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Falconer, D.J. et al., Mouse IgG2c Fc loop residues promote greater receptor-binding affinity than mouse IgG2b or human IgG1. PLoS ONE (2018)

Release Date

2018-02-14

Peptides

Igh protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Igh protein