SMTL ID : 6bhv.4 (3 other biounits)

Human PARP-1 bound to NAD+ analog benzamide adenine dinucleotide (BAD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DQV: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylphenyl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)(Non-covalent)

DQV.1: 20 residues within 4Å: Chain A: H.121, G.122, S.123, N.127, G.130, I.131, Q.134, G.135, L.136, R.137, A.139, G.147, Y.148, M.149, Y.155, F.156, A.157, S.163, Y.166, E.247 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.155, A:Y.166, A:Y.166, A:E.247 Hydrogen bonds: A:G.122, A:G.122, A:S.123, A:N.127, A:G.135, A:R.137, A:G.147, A:M.149, A:E.247 Water bridges: A:R.137, A:R.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langelier, M.F. et al., NAD+analog reveals PARP-1 substrate-blocking mechanism and allosteric communication from catalytic center to DNA-binding domains. Nat Commun (2018)

Release Date

2018-02-28

Peptides

Poly [ADP-ribose] polymerase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Poly [ADP-ribose] polymerase 1

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