SMTL ID : 6bi2.1 (1 other biounit)

Trastuzumab Fab D185A (Light Chain) Mutant Biotin Conjugation.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: L.148, V.176, S.184, L.185, S.186 Chain B: T.178 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Water bridges: B:S.176, B:T.178, B:T.178, A:S.186, A:S.186 Hydrogen bonds: A:S.186 EDO.2: 6 residues within 4Å: Chain A: E.155, P.156, V.157, P.174, A.175, L.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.157, A:V.157, A:A.175 EDO.4: 7 residues within 4Å: Chain B: P.119, Y.186, F.209, N.210, R.211, G.212, E.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.186, B:G.212, B:E.213 EDO.5: 5 residues within 4Å: Chain A: Y.95 Chain B: Q.38, K.39, G.41, K.42 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.38, B:G.41, B:K.42, A:Y.95 Water bridges: A:G.42

1 x BTN: BIOTIN(Covalent)

BTN.3: 4 residues within 4Å: Chain B: D.151, K.188, H.189, K.190 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, G.H. et al., Tuning a Protein-Labeling Reaction to Achieve Highly Site Selective Lysine Conjugation. Chembiochem (2018)

Release Date

2018-02-14

Peptides

Trastuzumab Anti-HER2 Fab Heavy Chain: A
Trastuzumab Anti-HER2 Fab Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Trastuzumab Anti-HER2 Fab Heavy Chain

Trastuzumab Anti-HER2 Fab Light Chain

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