SMTL ID : 6bjo.1

PICK1 PDZ domain in complex with the small molecule inhibitor BIO124.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x DUY: (2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid(Non-covalent)

DUY.1: 10 residues within 4Å: Chain A: L.48, I.49, G.50, I.51, S.52, I.53, F.69, A.103, I.106, Q.107 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.48, A:I.51, A:I.53, A:F.69, A:F.69, A:A.103, A:I.106 Hydrogen bonds: A:I.49, A:G.50, A:I.51, A:I.51, A:Q.107 DUY.2: 11 residues within 4Å: Chain B: L.48, I.49, G.50, I.51, S.52, F.69, T.72, K.99, A.103, I.106, Q.107 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.48, B:I.51, B:F.69, B:F.69, B:T.72, B:A.103, B:I.106, B:I.106 Hydrogen bonds: B:I.49, B:G.50, B:I.51, B:I.51, B:I.51, B:Q.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marcotte, D.J. et al., Lock and chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure. Protein Sci. (2018)

Release Date

2018-01-10

Peptides

PRKCA-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PRKCA-binding protein

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