SMTL ID : 6bjr.1

Crystal structure of prothrombin mutant S101C/A470C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

monomer

Ligands

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-BMA.1: 1 residues within 4Å: Chain A: N.78 No protein-ligand interaction detected (PLIP)

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: R.9, A.30, L.31, E.32 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:A.30 MG.3: 3 residues within 4Å: Chain A: E.25, E.29 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: E.25, E.26, E.29 Ligands: MG.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.25 MG.5: 2 residues within 4Å: Chain A: E.26, E.29 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: E.16, E.26 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain A: E.14, R.15, E.19, R.54 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 1 residues within 4Å: Chain A: N.373 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chinnaraj, M. et al., Structure of prothrombin in the closed form reveals new details on the mechanism of activation. Sci Rep (2018)

Release Date

2018-06-27

Peptides

Prothrombin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prothrombin

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