SMTL ID : 6bkb.1

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: N.123, T.125, F.127, K.129 Ligands: NAG.3 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: T.57 Chain B: N.12, Y.94, W.96 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.94 Hydrogen bonds: B:Y.94 NAG.3: 6 residues within 4Å: Chain A: Y.104 Chain B: N.19 Chain C: S.30, G.31, Y.33 Ligands: NAG-NAG.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.30, C:S.30, C:G.31 NAG.4: 3 residues within 4Å: Chain B: C.41, C.164, N.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., Genetic and structural insights into broad neutralization of hepatitis C virus by human VH1-69 antibodies. Sci Adv (2019)

Release Date

2018-12-26

Peptides

Fab AR3A heavy chain: A
Polyprotein: B
Fab AR3A light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
E

C
L

Fab AR3A heavy chain

Polyprotein

Fab AR3A light chain

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