SMTL ID : 6bkc.1

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: N.19, S.21 No protein-ligand interaction detected (PLIP) NAG.2: 6 residues within 4Å: Chain C: T.68, N.123, S.124, T.125, F.127, K.129 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.123, C:T.125, C:K.129 NAG.3: 3 residues within 4Å: Chain C: N.95, E.98, N.99 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.98 NAG.4: 6 residues within 4Å: Chain A: G.53, V.54, T.55 Chain C: N.12, Y.94, W.96 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:Y.94 Hydrogen bonds: A:T.55, A:T.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., Genetic and structural insights into broad neutralization of hepatitis C virus by human VH1-69 antibodies. Sci Adv (2019)

Release Date

2018-12-26

Peptides

Fab AR3B heavy chain: A
Fab AR3B light chain: B
Polyprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
E

Fab AR3B heavy chain

Fab AR3B light chain

Polyprotein

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