SMTL ID : 6bkw.1

BTK complex with compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.96, R.99, K.204 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.96, A:R.99 SO4.2: 5 residues within 4Å: Chain A: S.201, K.204, Y.226, P.228, H.229 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.226, A:H.229 Water bridges: A:H.229, A:H.229, A:L.230 Salt bridges: A:K.204, A:H.229 SO4.3: 2 residues within 4Å: Chain A: R.99, H.100 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.99, A:H.100

1 x DXM: N-(3-{5-[(1,5-dimethyl-1H-pyrazol-3-yl)amino]-1-methyl-6-oxo-1,6-dihydropyridazin-3-yl}-2,6-difluorophenyl)-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide(Non-covalent)

DXM.4: 27 residues within 4Å: Chain A: L.17, G.18, T.19, G.20, Q.21, F.22, V.25, A.37, K.39, V.67, T.83, E.84, Y.85, M.86, A.87, N.88, G.89, D.130, N.135, L.137, S.147, D.148, L.151, S.152, V.155, Y.160 Ligands: GOL.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.17, A:L.17, A:Q.21, A:F.22, A:V.25, A:V.25, A:Y.85, A:D.148, A:V.155 Hydrogen bonds: A:K.39, A:M.86, A:M.86, A:D.148 Water bridges: A:G.20, A:T.83 Halogen bonds: A:D.148

1 x FPZ: triphenylphosphane(Non-covalent)

FPZ.5: 7 residues within 4Å: Chain A: W.4, I.6, W.30, Y.34, D.35, V.36, Y.70 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.4, A:Y.34, A:Y.34, A:Y.34, A:Y.34, A:Y.70, A:Y.70, A:Y.70 pi-Stacking: A:W.30

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: K.15, L.17, Y.27, Y.85, A.87 Ligands: DXM.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.85, A:Y.85 GOL.7: 7 residues within 4Å: Chain A: T.104, R.227, H.229, L.230, A.231, S.232, E.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nittinger, E. et al., Water molecules in protein-ligand interfaces. Evaluation of software tools and SAR comparison. J. Comput. Aided Mol. Des. (2019)

Release Date

2018-11-07

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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