SMTL ID : 6blf.1 (1 other biounit)

PDE2 complexed with 2-[6-fluoro-8-methylsulfonyl-9-[(1R)-1-[4-(trifluoromethyl)phenyl]ethyl]-1,2,3,4-tetrahydrocarbazol-1-yl]acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x DY1: [(1S)-6-fluoro-8-(methylsulfonyl)-9-{(1R)-1-[4-(trifluoromethyl)phenyl]ethyl}-2,3,4,9-tetrahydro-1H-carbazol-1-yl]acetic acid(Non-covalent)

DY1.1: 17 residues within 4Å: Chain A: Y.109, H.110, N.158, T.222, D.223, L.224, T.259, D.262, L.263, I.276, I.280, Y.281, F.284, M.301, Q.313, F.316, I.320 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.224, A:L.263, A:I.320 Hydrogen bonds: A:N.158 Water bridges: A:N.159 pi-Stacking: A:F.284, A:F.284, A:F.316 Halogen bonds: A:T.259

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.114, H.150, D.151, D.262 Ligands: MG.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.114, A:H.150, A:D.151, A:D.262, H2O.2, H2O.2

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.151 Ligands: ZN.2 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.151, H2O.1, H2O.1, H2O.2, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, H.P., Hydrolase complex. To Be Published

Release Date

2018-11-14

Peptides

cGMP-dependent 3',5'-cyclic phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent 3',5'-cyclic phosphodiesterase

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