SMTL ID : 6bmm.1

Structure of human DHHC20 palmitoyltransferase, space group P21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.136, C.139, H.149, C.156 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.136, A:C.139, A:H.149, A:C.156 ZN.2: 5 residues within 4Å: Chain A: C.122, C.125, H.135, S.141, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.122, A:C.125, A:H.135, A:C.142 ZN.10: 4 residues within 4Å: Chain B: C.122, C.125, H.135, C.142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.122, B:C.125, B:H.135, B:C.142 ZN.11: 4 residues within 4Å: Chain B: C.136, C.139, H.149, C.156 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.136, B:C.139, B:H.149, B:C.156

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: K.129, H.134, H.135 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.135, A:H.135, A:H.135 Water bridges: A:R.120, A:R.120 Salt bridges: A:K.129, A:H.134 PO4.12: 4 residues within 4Å: Chain B: R.120, K.129, H.134, H.135 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.120, B:H.135 Salt bridges: B:K.129, B:H.134

2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.4: 13 residues within 4Å: Chain A: V.19, C.150, P.151, W.152, F.168, S.172, Y.175, C.176, V.210, F.214, S.217, V.218, L.221 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.19, A:W.152, A:W.152, A:F.168, A:Y.175, A:V.210, A:F.214, A:F.214, A:L.221 OLB.13: 10 residues within 4Å: Chain B: V.19, F.59, C.150, P.151, W.152, F.168, Y.175, C.176, F.214, V.218 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.19, B:F.59, B:W.152, B:W.152, B:F.168, B:F.214, B:F.214

6 x DYD: (2S,5S)-hexane-2,5-diol(Non-covalent)

DYD.5: 3 residues within 4Å: Chain A: K.270, L.273, L.274 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.273, A:L.273 DYD.6: 2 residues within 4Å: Chain A: Y.271, F.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.271 DYD.7: 1 residues within 4Å: Chain A: W.61 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.61, A:W.61 DYD.8: 4 residues within 4Å: Chain A: W.261, F.265, W.272, L.273 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.261, A:W.261, A:F.265, A:F.265, A:F.265, A:W.272, A:L.273 DYD.9: 3 residues within 4Å: Chain A: E.185, I.188 Chain B: V.47 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.188, A:I.188, B:V.47 DYD.14: 6 residues within 4Å: Chain B: M.58, Y.171, K.269, K.270, L.273, L.274 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.273, B:L.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rana, M.S. et al., Fatty acyl recognition and transfer by an integral membraneS-acyltransferase. Science (2018)

Release Date

2018-01-24

Peptides

human DHHC20 palmitoyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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human DHHC20 palmitoyltransferase