SMTL ID : 6bmn.1

Structure of human DHHC20 palmitoyltransferase, space group P63

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.138, C.141, H.151, C.158 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.138, A:C.141, A:H.151, A:C.158 ZN.2: 5 residues within 4Å: Chain A: C.124, C.127, H.137, S.143, C.144 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.124, A:C.127, A:H.137, A:C.144 ZN.5: 4 residues within 4Å: Chain B: C.124, C.127, H.137, C.144 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.124, B:C.127, B:H.137, B:C.144 ZN.6: 4 residues within 4Å: Chain B: C.138, C.141, H.151, C.158 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.138, B:C.141, B:H.151, B:C.158

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: K.131, H.136, H.137 Ligands: PO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.137, A:H.137 Salt bridges: A:K.131, A:H.136 PO4.4: 3 residues within 4Å: Chain A: R.122, H.136 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.117 Salt bridges: A:R.122, A:H.136 PO4.8: 4 residues within 4Å: Chain B: S.116, R.122, H.136 Ligands: PAP.7 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.122, B:K.131, B:H.136

1 x PAP: 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

PAP.7: 5 residues within 4Å: Chain B: K.131, H.136, H.137, S.139 Ligands: PO4.8 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.137, B:H.137, B:S.139, B:S.139 Salt bridges: B:K.131, B:K.131, B:H.136, B:H.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rana, M.S. et al., Fatty acyl recognition and transfer by an integral membraneS-acyltransferase. Science (2018)

Release Date

2018-01-24

Peptides

human DHHC20 palmitoyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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human DHHC20 palmitoyltransferase