SMTL ID : 6bnz.1

Crystal structure of E144Q-glyoxalase I mutant from Zea mays in space group P4(1)2(1)2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.102, Q.150, Q.163, E.214 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.102, A:E.214, H2O.3, H2O.3

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 10 residues within 4Å: Chain A: R.126, V.131, K.132, I.138, F.140, M.165, R.167, Y.197, T.216, N.218 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.197, A:Y.197, A:T.216 Hydrogen bonds: A:K.132, A:N.218, A:N.218 Water bridges: A:R.167, A:Y.195, A:Y.197, A:N.218 Salt bridges: A:R.126, A:K.132, A:R.167

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: Y.94, D.95, I.96, G.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.96, A:G.97 FMT.4: 2 residues within 4Å: Chain A: N.78, L.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78 FMT.5: 4 residues within 4Å: Chain A: V.35, R.37, T.86 Ligands: FMT.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.37, A:T.86 FMT.6: 4 residues within 4Å: Chain A: R.37, Q.232, K.282 Ligands: FMT.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.37, A:R.37, A:K.282, A:K.282 FMT.7: 3 residues within 4Å: Chain A: R.188, K.189, K.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, J.M. et al., Deciphering the number and location of active sites in the monomeric glyoxalase I of Zea mays. Febs J. (2019)

Release Date

2018-11-21

Peptides

Lactoylglutathione lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactoylglutathione lyase