SMTL ID : 6bor.1 (1 other biounit)

Human APE1 substrate complex with an G/G mismatch adjacent the THF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: V.172, R.185, D.189, F.192, L.211, G.239, F.240 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.185 EDO.2: 3 residues within 4Å: Chain A: K.63, E.86, E.87 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.86, A:E.87 Water bridges: A:D.50, A:K.52, A:K.52, A:K.63 EDO.3: 4 residues within 4Å: Chain A: L.44, Y.45, W.267, N.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.45, A:Y.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: Q.96, K.98, Y.128, S.129, Y.171 Chain B: G.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairlamb, M.S. et al., Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-08-15

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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