SMTL ID : 6bqa.1

BRD9 bromodomain in complex with 3-(6-(but-3-en-1-yl)-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)-N,N-dimethylbenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

1 x 67C: 3-[6-(but-3-en-1-yl)-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl]-N,N-dimethylbenzamide(Non-covalent)

67C.1: 9 residues within 4Å: Chain A: F.23, F.24, V.28, I.32, A.75, Y.78, N.79, Y.85, L.88 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.23, A:F.23, A:F.24, A:F.24, A:I.32, A:A.75, A:Y.85, A:Y.85 Hydrogen bonds: A:N.79, A:N.79 pi-Stacking: A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nittinger, E. et al., Water molecules in protein-ligand interfaces. Evaluation of software tools and SAR comparison. J. Comput. Aided Mol. Des. (2019)

Release Date

2018-11-14

Peptides

Bromodomain-containing protein 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 9

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