SMTL ID : 6bqd.1 (1 other biounit)

TAF1-BD2 bromodomain in complex with (E)-3-(6-(but-2-en-1-yl)-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)-N,N-dimethylbenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x 69G: 3-{6-[(2E)-but-2-en-1-yl]-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl}-N,N-dimethylbenzamide(Non-covalent)

69G.1: 15 residues within 4Å: Chain A: W.26, P.27, F.28, H.30, P.31, V.32, N.33, F.36, V.37, Y.40, M.48, D.49, Y.82, N.83, Y.89 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.26, A:V.32, A:F.36, A:V.37, A:V.37, A:D.49 Hydrogen bonds: A:N.33, A:N.83, A:N.83 pi-Stacking: A:Y.89, A:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nittinger, E. et al., Water molecules in protein-ligand interfaces. Evaluation of software tools and SAR comparison. J. Comput. Aided Mol. Des. (2019)

Release Date

2019-02-20

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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