SMTL ID : 6bqh.1

Crystal structure of 5-HT2C in complex with ritanserin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x E2J: 6-(2-{4-[bis(4-fluorophenyl)methylidene]piperidin-1-yl}ethyl)-7-methyl-5H-[1,3]thiazolo[3,2-a]pyrimidin-5-one(Non-covalent)

E2J.1: 20 residues within 4Å: Chain A: W.117, D.121, V.122, S.125, T.126, I.129, F.201, V.202, G.205, S.206, A.209, F.210, F.358, W.362, F.365, F.366, L.388, N.389, V.392, Y.396 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.117, A:I.129, A:A.209, A:F.210, A:F.366, A:Y.396 Salt bridges: A:D.121 pi-Stacking: A:W.362 Halogen bonds: A:F.201

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.2: 5 residues within 4Å: Chain A: W.42, L.45, S.46, I.49 Ligands: OLC.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.42, A:W.42, A:W.42, A:L.45, A:I.49 OLC.3: 1 residues within 4Å: Ligands: OLC.2 No protein-ligand interaction detected (PLIP) OLC.4: 6 residues within 4Å: Chain A: I.52, L.60, M.63, Y.420, N.424, Y.425 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.52 Hydrogen bonds: A:Y.420, A:N.424 OLC.5: 2 residues within 4Å: Chain A: S.66, M.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.66, A:S.66 OLC.6: 4 residues within 4Å: Chain A: I.212, T.215, I.216, I.219 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.212, A:I.212, A:I.216 OLC.7: 5 residues within 4Å: Chain A: M.130, C.133, I.164, V.208, I.212 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.164, A:I.212

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 2 residues within 4Å: Chain A: R.414, R.415 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.414, A:R.415

2 x OLA: OLEIC ACID(Non-covalent)

OLA.9: 4 residues within 4Å: Chain A: M.80, I.84, L.88 Ligands: OLA.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.84, A:L.88 Hydrogen bonds: A:S.66 OLA.10: 8 residues within 4Å: Chain A: Y.77, M.80, I.84, F.124, I.159, I.162, W.166 Ligands: OLA.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.84, A:I.84, A:F.124, A:I.162, A:W.166, A:W.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, Y. et al., 5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology. Cell (2018)

Release Date

2018-02-14

Peptides

5-hydroxytryptamine receptor 2C,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 2C,Soluble cytochrome b562

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