SMTL ID : 6br2.2 (1 other biounit)

Structure of RORgt in complex with a novel isoquinoline inverse agonist.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 5 residues within 4Å: Chain A: E.40, G.43, Y.44, K.47, R.55 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.40, A:Y.44 Hydrogen bonds: A:E.40, A:K.47, A:R.55, A:R.55

1 x E3S: (1R)-N-(4-tert-butyl-3-fluorophenyl)-6-methoxy-2-[(3-oxo-2,3-dihydro-1,2-oxazol-5-yl)acetyl]-1,2,3,4-tetrahydroisoquinoline-1-carboxamide(Non-covalent)

E3S.2: 14 residues within 4Å: Chain A: Q.22, L.23, C.56, H.59, L.60, R.100, A.104, V.112, F.113, F.114, E.115, G.116, F.124, F.137 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.23, A:L.60, A:A.104, A:V.112, A:F.114, A:F.124, A:F.124, A:F.137 Hydrogen bonds: A:F.113, A:E.115, A:G.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kono, M. et al., Discovery of [ cis-3-({(5 R)-5-[(7-Fluoro-1,1-dimethyl-2,3-dihydro-1 H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridin-6(5 H)-yl}carbonyl)cyclobutyl]acetic Acid (TAK-828F) as a Potent, Selective, and Orally Available Novel Retinoic Acid Receptor-Related Orphan Receptor gamma t Inverse Agonist. J. Med. Chem. (2018)

Release Date

2018-03-21

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nuclear receptor ROR-gamma

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