SMTL ID : 6brm.1 (3 other biounits)

The crystal structure of isothiocyanate hydrolase from Delia radicum gut bacteria

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.67, H.69, H.72, H.128, D.164 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.69, A:H.128, A:D.164, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.71, H.72, D.164, H.221 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.71, A:H.72, A:D.164, H2O.1, H2O.1 ZN.4: 6 residues within 4Å: Chain B: H.67, H.69, H.72, H.128, D.164 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.67, B:H.69, B:H.128, B:D.164, H2O.1 ZN.5: 5 residues within 4Å: Chain B: D.71, H.72, D.164, H.221 Ligands: ZN.4 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.71, B:H.72, B:D.164, B:H.221, H2O.1, H2O.1

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: F.35, I.198, H.227 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van den Bosch, T.J.M. et al., Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria. Appl. Environ. Microbiol. (2018)

Release Date

2018-01-31

Peptides

Putative metal-dependent isothiocyanate hydrolase SaxA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative metal-dependent isothiocyanate hydrolase SaxA

Related Entries With Identical Sequence