SMTL ID : 6bs4.1

Crystal structure of ATPgammaS-bound bacterial Get3-like A and B in Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 19 residues within 4Å: Chain A: K.29, G.30, G.31, T.32, G.33, K.34, S.35, T.36, R.60, N.240, R.241, P.316, T.317, V.318, V.322, L.330 Chain B: R.159, D.258 Ligands: MG.2 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.31, A:T.32, A:T.32, A:G.33, A:K.34, A:K.34, A:S.35, A:T.36, A:T.36, A:R.60, A:R.60, A:N.240, A:R.241, A:P.316, A:V.318, B:D.258 Water bridges: A:K.34, A:S.35, A:S.35, A:S.35, A:S.35, A:D.162 Salt bridges: A:K.34

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.35 Ligands: AGS.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.35, H2O.2, H2O.2, H2O.3 MG.4: 3 residues within 4Å: Chain B: T.33, D.56 Ligands: ADP.3 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.33, B:D.56, H2O.4, H2O.5, H2O.5

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 18 residues within 4Å: Chain B: G.28, G.29, V.30, G.31, K.32, T.33, T.34, N.283, R.284, V.353, P.354, S.355, L.356, F.358, D.359, V.360, L.369 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.29, B:V.30, B:G.31, B:K.32, B:T.33, B:T.33, B:T.34, B:N.283, B:P.354, B:L.356, B:V.360, B:V.360 Water bridges: B:T.33, B:R.284, B:D.359, B:D.359 pi-Cation interactions: B:R.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, K. et al., Characterization of Guided Entry of Tail-Anchored Proteins 3 Homologues in Mycobacterium tuberculosis. J.Bacteriol. (2019)

Release Date

2019-05-15

Peptides

Putative ATPase Rv3679: A
Anion transporter: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative ATPase Rv3679

Anion transporter

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