SMTL ID : 6btp.1 (1 other biounit)

BMP1 complexed with a hydroxamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 3 residues within 4Å: Chain A: R.111, I.117, F.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.111 Water bridges: A:R.119, A:K.132, A:K.132

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.94, H.98, H.104 Ligands: E8J.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.94, A:H.98, A:H.104, H2O.2 ZN.3: 5 residues within 4Å: Chain A: X.1, A.2, E.105, D.146, Q.193 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:?.1, A:E.105, A:E.105, H2O.1, H2O.2

1 x E8J: (1R,3S,4S)-2-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]heptanoyl}-N-(3-methoxypyrazin-2-yl)-2-azabicyclo[2.2.1]heptane-3-carboxamide(Non-covalent)

E8J.4: 14 residues within 4Å: Chain A: G.65, C.67, S.68, Y.69, V.70, H.94, E.95, H.98, W.103, H.104, Q.126, Y.128, F.158 Ligands: ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.70, A:W.103, A:W.103, A:F.158 Hydrogen bonds: A:S.68, A:S.68 Water bridges: A:R.9, A:V.70, A:Y.153 pi-Stacking: A:Y.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallander, L.S. et al., Reverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1. ACS Med Chem Lett (2018)

Release Date

2018-08-08

Peptides

Bone morphogenetic protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bone morphogenetic protein 1

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