- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 8 residues within 4Å:- Chain A: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.297, A:Q.349, A:P.351, A:G.354, H2O.2
CA.12: 10 residues within 4Å:- Chain B: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354, G.355
- Ligands: PDO.16
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.297, B:Q.349, B:P.351, B:G.354, H2O.15
CA.21: 9 residues within 4Å:- Chain C: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
- Ligands: PDO.24
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.297, C:A.346, C:Q.349, C:P.351, C:G.354
CA.30: 9 residues within 4Å:- Chain D: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
- Ligands: PDO.33
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.297, D:A.346, D:Q.349, D:P.351, D:G.354
- 24 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.3: 7 residues within 4Å:- Chain A: E.6, V.7, F.8, R.9, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.7, A:V.7
- Water bridges: A:V.7
PDO.4: 10 residues within 4Å:- Chain A: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, D.352, G.353
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.222
- Water bridges: A:K.188, A:H.348
PDO.5: 5 residues within 4Å:- Chain A: K.77, K.78, V.117, A.118, F.119
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.77, A:F.119, A:F.119
PDO.6: 3 residues within 4Å:- Chain A: E.136, R.139
- Ligands: PDO.9
No protein-ligand interaction detected (PLIP)PDO.7: 9 residues within 4Å:- Chain A: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286, V.334
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.272
- Hydrogen bonds: A:R.272
PDO.8: 7 residues within 4Å:- Chain A: G.54, T.57, V.76, F.81, E.236, L.237, E.241
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.76
- Hydrogen bonds: A:E.241
- Water bridges: A:Q.58, A:N.239
PDO.9: 6 residues within 4Å:- Chain A: R.121, M.131, E.132, N.135, E.136
- Ligands: PDO.6
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:N.135
PDO.10: 12 residues within 4Å:- Chain A: V.48, N.49, F.51, T.167, A.168, V.235
- Chain B: A.13, S.14, E.43
- Chain D: R.308, T.310, D.313
6 PLIP interactions:1 interactions with chain B, 2 interactions with chain D, 3 interactions with chain A- Water bridges: B:A.13, A:T.167, A:T.167
- Hydrophobic interactions: D:D.313, A:T.167
- Hydrogen bonds: D:D.313
PDO.14: 7 residues within 4Å:- Chain B: E.6, V.7, F.8, R.9, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.7, B:V.7, B:R.362
PDO.15: 8 residues within 4Å:- Chain B: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.275
- Hydrogen bonds: B:K.276, B:D.283
PDO.16: 12 residues within 4Å:- Chain B: W.222, E.297, A.298, A.299, S.300, L.312, A.346, E.347, H.348, D.352, G.353
- Ligands: CA.12
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.222
- Hydrogen bonds: B:A.346
- Water bridges: B:K.188, B:A.298, B:H.348
PDO.17: 12 residues within 4Å:- Chain B: E.88, G.89, I.317, R.321, S.322, A.325
- Chain D: E.88, G.89, I.317, R.321, S.322, A.325
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain D- Water bridges: B:G.89, B:S.322, D:T.87, D:G.89
- Hydrophobic interactions: D:E.88, D:A.325
- Hydrogen bonds: D:G.89
PDO.18: 5 residues within 4Å:- Chain B: R.305, G.306, R.307
- Chain D: G.336, D.337
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:D.337, B:R.307
PDO.19: 5 residues within 4Å:- Chain B: D.122, F.123, L.124, P.125, L.238
2 PLIP interactions:2 interactions with chain B- Water bridges: B:F.123, B:F.123
PDO.22: 6 residues within 4Å:- Chain C: E.6, V.7, F.8, L.255, V.290, R.362
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:V.7, C:V.7
PDO.23: 12 residues within 4Å:- Chain A: E.88, G.89, I.317, R.321, S.322, A.325
- Chain C: E.88, G.89, I.317, R.321, S.322, A.325
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:E.88, A:A.325
- Hydrogen bonds: A:G.89
- Water bridges: A:S.322, A:S.322, C:S.322
PDO.24: 14 residues within 4Å:- Chain C: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, Q.349, G.350, P.351, D.352, G.353
- Ligands: CA.21
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:W.222, C:E.347
- Hydrogen bonds: C:H.348, C:P.351
- Water bridges: C:A.346, C:E.347
PDO.25: 10 residues within 4Å:- Chain C: P.153, R.154, D.155, V.156, H.157, L.205, E.207, S.227, V.228, H.259
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.228
- Hydrogen bonds: C:V.156, C:E.207, C:E.207
PDO.26: 5 residues within 4Å:- Chain B: E.169
- Chain C: T.303, G.306, R.307, R.308
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.303
- Water bridges: C:G.302, C:R.308
PDO.27: 9 residues within 4Å:- Chain C: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286, V.334
4 PLIP interactions:4 interactions with chain C- Water bridges: C:R.272, C:R.281, C:D.283, C:V.334
PDO.28: 8 residues within 4Å:- Chain A: A.268, R.272, S.333, V.334
- Chain C: A.268, D.269, R.272, V.334
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:D.269, C:R.272, C:R.272, A:R.272
- Water bridges: C:D.269
PDO.31: 9 residues within 4Å:- Chain D: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286, V.334
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:R.272
- Hydrogen bonds: D:R.272, D:K.276, D:S.282
PDO.32: 7 residues within 4Å:- Chain D: E.6, V.7, F.8, K.29, L.255, V.290, R.362
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:V.7
PDO.33: 14 residues within 4Å:- Chain D: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, Q.349, G.350, P.351, D.352, G.353
- Ligands: CA.30
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:W.222
- Hydrogen bonds: D:H.348, D:Q.349, D:G.350
- Water bridges: D:A.298, D:A.346, D:E.347
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 24 x PDO: 1,3-PROPANDIOL(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D