SMTL ID : 6bux.1

CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x DA- DA- DT- DC- DC- DC- DA- DA- DA: DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3')(Non-covalent)

DA-DA-DT-DC-DC-DC-DA-DA-DA.1: 22 residues within 4Å: Chain A: W.26, V.27, R.28, G.29, R.30, H.31, E.32, T.33, N.59, A.61, K.62, H.63, H.72, A.73, W.100, S.101, P.102, C.103, Y.130, D.131, D.132, K.133 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.72, C.103, C.106 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:C.103, A:C.106, H2O.6

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: A.15, T.16, F.19 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.16 Water bridges: A:F.19, A:N.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maiti, A. et al., Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain