SMTL ID : 6bv6.1

Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana after 3-hour soak with juglone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x JUG: 5-hydroxynaphthalene-1,4-dione(Covalent)

JUG.1: 4 residues within 4Å: Chain A: N.261, K.263, T.265, C.275 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.263 pi-Cation interactions: A:K.263 JUG.2: 5 residues within 4Å: Chain A: C.282, K.443, P.461, P.462, P.463 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.443 JUG.3: 7 residues within 4Å: Chain A: T.298, R.299, C.302, K.307, F.310, N.311, Q.314 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.311, A:Q.314 pi-Cation interactions: A:K.307

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.273, C.276, H.477, C.494 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.273, A:C.276, A:H.477, A:C.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N. et al., Inhibition of protein-only RNase P with Gambogic acid and Juglone. To Be Published

Release Date

2019-06-12

Peptides

Proteinaceous RNase P 1, chloroplastic/mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinaceous RNase P 1, chloroplastic/mitochondrial

Related Entries With Identical Sequence