SMTL ID : 6bvc.1

Crystal structure of AAC(3)-Ia in complex with coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 18 residues within 4Å: Chain A: E.50, F.51, L.111, A.112, V.113, R.118, R.119, Q.120, G.121, I.122, A.123, T.124, P.152, A.153, A.155, L.156, K.159 Ligands: GOL.5 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.111, A:A.123, A:P.152 Hydrogen bonds: A:V.113, A:R.119, A:R.119, A:G.121, A:I.122, A:A.123, A:T.124 Water bridges: A:E.50, A:E.50, A:R.118, A:R.118, A:Q.120, A:Q.120 Salt bridges: A:R.119, A:K.159 pi-Cation interactions: A:R.119, A:R.119 COA.8: 18 residues within 4Å: Chain B: E.50, F.51, L.111, A.112, V.113, R.118, R.119, Q.120, G.121, I.122, A.123, T.124, P.152, A.153, A.155, L.156, K.159 Ligands: GOL.12 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.111, B:A.123, B:P.152 Hydrogen bonds: B:V.113, B:R.119, B:R.119, B:G.121, B:I.122, B:A.123, B:T.124 Water bridges: B:E.50, B:E.50, B:R.118, B:R.118, B:Q.120, B:Q.120 Salt bridges: B:R.119, B:K.159 pi-Cation interactions: B:R.119, B:R.119

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: R.31, L.32, F.76, I.77, A.78 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: R.31, L.32, F.76, I.77, A.78 Ligand excluded by PLIP

4 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)

PE3.3: 6 residues within 4Å: Chain A: R.31, L.32, G.33, L.71, R.72, S.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.72 PE3.4: 11 residues within 4Å: Chain A: T.75, V.95, P.97 Chain B: D.65, Y.66, N.69, L.70, S.73, T.75, Y.94 Ligands: PE3.11 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.65, B:N.69, B:S.73, B:T.75 Water bridges: B:Y.66 PE3.10: 6 residues within 4Å: Chain B: R.31, L.32, G.33, L.71, R.72, S.73 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.72 PE3.11: 11 residues within 4Å: Chain A: D.65, Y.66, N.69, L.70, S.73, T.75, Y.94 Chain B: T.75, V.95, P.97 Ligands: PE3.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.65, A:N.69, A:S.73, A:T.75 Water bridges: A:Y.66

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: F.51, Y.109, D.110, L.111, V.144, Q.145, A.153, Y.157 Ligands: COA.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.109, A:L.111, A:Y.157, A:Y.157 Water bridges: A:Q.145 GOL.6: 5 residues within 4Å: Chain A: M.24, I.27, Q.120, G.121, I.122 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.121 GOL.7: 4 residues within 4Å: Chain A: P.102, S.104, L.137, G.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.104 Water bridges: A:S.104 GOL.12: 9 residues within 4Å: Chain B: F.51, Y.109, D.110, L.111, V.144, Q.145, A.153, Y.157 Ligands: COA.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.109, B:L.111, B:Y.157, B:Y.157 Water bridges: B:Q.145 GOL.13: 5 residues within 4Å: Chain B: M.24, I.27, Q.120, G.121, I.122 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.121 GOL.14: 4 residues within 4Å: Chain B: P.102, S.104, L.137, G.138 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.104 Water bridges: B:S.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., To be published. To Be Published

Release Date

2017-12-27

Peptides

Aminoglycoside-(3)-N-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminoglycoside-(3)-N-acetyltransferase