SMTL ID : 6bve.1

Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: M.217, Q.219, I.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.217, A:I.222 NA.3: 3 residues within 4Å: Chain B: M.217, Q.219, I.222 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.222, B:I.222 Water bridges: B:D.223

2 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)

PGA.2: 13 residues within 4Å: Chain A: N.12, K.14, H.99, E.168, A.172, I.173, G.174, G.206, S.207, L.226, V.227, G.228, G.229 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.12, A:G.174, A:S.207, A:G.228, A:G.229 Water bridges: A:V.208, A:V.208, A:A.230 Salt bridges: A:K.14, A:K.14, A:H.99 PGA.4: 13 residues within 4Å: Chain B: N.12, K.14, H.99, E.168, A.172, I.173, G.174, G.206, S.207, L.226, V.227, G.228, G.229 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.12, B:G.174, B:S.207, B:G.228, B:G.229 Water bridges: B:V.208, B:V.208, B:A.230 Salt bridges: B:K.14, B:K.14, B:H.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Castro-Torres, E. et al., Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis. Front Mol Biosci (2018)

Release Date

2018-12-19

Peptides

Triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Triosephosphate isomerase