SMTL ID : 6bwh.2 (2 other biounits)

Crystal structure of Mycoibacterium tuberculosis Rv2983 in complex with PEP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.1: 12 residues within 4Å: Chain A: K.31, L.106, Q.128, G.161, T.162, F.176, G.177, S.180, D.202, D.204 Ligands: MG.2, MG.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.106 Hydrogen bonds: A:Q.128, A:T.162, A:G.177, A:S.180 Water bridges: A:D.130, A:D.130 Salt bridges: A:K.31

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.156, D.202, D.204 Ligands: PEP.1, MG.3 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.202, A:D.204, H2O.1, H2O.2, PEP.1 MG.3: 5 residues within 4Å: Chain A: D.130, D.202, D.204 Ligands: PEP.1, MG.2 6 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.130, A:D.202, A:D.204, H2O.1, H2O.1, PEP.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bashiri, G. et al., A revised biosynthetic pathway for the cofactor F420in prokaryotes. Nat Commun (2019)

Release Date

2018-12-19

Peptides

2-phospho-L-lactate guanylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

2-phospho-L-lactate guanylyltransferase

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