SMTL ID : 6bwy.4 (3 other biounits)

DNA substrate selection by APOBEC3G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: G.25 No protein-ligand interaction detected (PLIP) PO4.3: 2 residues within 4Å: Chain B: K.121, Q.123 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.123 Salt bridges: B:K.121 PO4.4: 2 residues within 4Å: Chain B: Q.106, Q.123 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.106, B:Q.106, B:Q.123 PO4.5: 3 residues within 4Å: Chain B: L.22, N.41, H.105 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.41

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: H.234, E.236, C.265, C.268 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.234, B:C.265, B:C.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ziegler, S.J. et al., Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies. PLoS ONE (2018)

Release Date

2018-04-18

Peptides

Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
E

Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion

Related Entries With Identical Sequence