- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 22 x CA: CALCIUM ION(Non-covalent)
CA.2: 6 residues within 4Å:- Chain A: E.10, E.11, D.60, E.62, D.107
- Ligands: CA.3
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.10, A:D.60, A:E.62, A:D.107
CA.3: 9 residues within 4Å:- Chain A: E.10, R.61, E.62, D.104, I.105, D.107, N.108, D.140
- Ligands: CA.2
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.10, A:E.62, A:D.104, A:I.105, A:D.140
CA.4: 6 residues within 4Å:- Chain A: N.106, N.108, D.138, D.140, N.144, D.198
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.108, A:D.138, A:D.140, A:N.144, A:D.198
CA.5: 4 residues within 4Å:- Chain A: E.123, D.183, E.185, D.219
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.123, A:E.185, A:D.219, H2O.1, H2O.1
CA.6: 6 residues within 4Å:- Chain A: E.123, E.185, D.216, T.217, D.219, D.252
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.123, A:E.185, A:E.185, A:D.216, A:D.252
CA.7: 6 residues within 4Å:- Chain A: N.218, N.220, D.250, D.252, N.256, D.305
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.220, A:D.250, A:D.252, A:N.256, A:D.305
CA.8: 5 residues within 4Å:- Chain A: E.235, D.290, E.292, D.326, N.327
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.235, A:D.290, A:E.292, A:D.326, H2O.1
CA.9: 6 residues within 4Å:- Chain A: E.235, E.292, D.323, M.324, D.326, D.367
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.235, A:E.292, A:D.323, A:M.324, A:D.367
CA.10: 6 residues within 4Å:- Chain A: N.325, N.327, D.365, D.367, N.371, D.424
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.327, A:D.365, A:D.367, A:N.371, A:D.424
CA.11: 5 residues within 4Å:- Chain A: E.350, D.409, Y.410, D.442, V.443
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.350, A:E.350, A:D.409, A:D.442
CA.12: 2 residues within 4Å:- Chain A: D.188, S.189
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.188
CA.14: 6 residues within 4Å:- Chain B: E.10, E.11, D.60, E.62, D.107
- Ligands: CA.15
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.10, B:D.60, B:E.62, B:D.107
CA.15: 9 residues within 4Å:- Chain B: E.10, R.61, E.62, D.104, I.105, D.107, N.108, D.140
- Ligands: CA.14
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.10, B:E.62, B:D.104, B:I.105, B:D.140
CA.16: 6 residues within 4Å:- Chain B: N.106, N.108, D.138, D.140, N.144, D.198
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.108, B:D.138, B:D.140, B:N.144, B:D.198
CA.17: 4 residues within 4Å:- Chain B: E.123, D.183, E.185, D.219
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.123, B:E.185, B:D.219, H2O.1, H2O.2
CA.18: 6 residues within 4Å:- Chain B: E.123, E.185, D.216, T.217, D.219, D.252
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.123, B:E.185, B:E.185, B:D.216, B:D.252
CA.19: 6 residues within 4Å:- Chain B: N.218, N.220, D.250, D.252, N.256, D.305
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.220, B:D.250, B:D.252, B:N.256, B:D.305
CA.20: 5 residues within 4Å:- Chain B: E.235, D.290, E.292, D.326, N.327
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.235, B:D.290, B:E.292, B:D.326, H2O.2
CA.21: 6 residues within 4Å:- Chain B: E.235, E.292, D.323, M.324, D.326, D.367
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.235, B:E.292, B:D.323, B:M.324, B:D.367
CA.22: 6 residues within 4Å:- Chain B: N.325, N.327, D.365, D.367, N.371, D.424
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.327, B:D.365, B:D.367, B:N.371, B:D.424
CA.23: 5 residues within 4Å:- Chain B: E.350, D.409, Y.410, D.442, V.443
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.350, B:E.350, B:D.409, B:D.442
CA.24: 2 residues within 4Å:- Chain B: D.188, S.189
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.188
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Modak, D. et al., Identification of an adhesive interface for the non-clustered delta 1 protocadherin-1 involved in respiratory diseases. Commun Biol (2019)
- Release Date
- 2018-12-19
- Peptides
- Protocadherin-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 22 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Modak, D. et al., Identification of an adhesive interface for the non-clustered delta 1 protocadherin-1 involved in respiratory diseases. Commun Biol (2019)
- Release Date
- 2018-12-19
- Peptides
- Protocadherin-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A