SMTL ID : 6bxf.1 (1 other biounit)

Crystal structure of an extended b3 integrin L33

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: V.268, K.269, I.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.269, A:I.270

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: S.306, N.308, S.335, I.336, E.337 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.337 Hydrogen bonds: A:S.306, A:S.306, A:S.335, A:E.337 NAG.3: 1 residues within 4Å: Chain A: N.145 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.145 NAG.4: 6 residues within 4Å: Chain A: N.386, N.387, G.388, N.389, P.401, W.403 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.387 Hydrogen bonds: A:N.387, A:P.401

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: D.119, S.121, S.123, T.188, D.221, G.222 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.121, A:S.123, A:D.221, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Structure of an extended beta3integrin. Blood (2018)

Release Date

2018-08-01

Peptides

Chimera protein of Integrin beta-3 and Integrin alpha-L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chimera protein of Integrin beta-3 and Integrin alpha-L

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