SMTL ID : 6bxj.1

Structure of a single-chain beta3 integrin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.119, S.121, S.123, D.221, G.222 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.121, A:S.123, A:D.221, H2O.4 MG.2: 1 residues within 4Å: Chain A: W.171 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 8 residues within 4Å: Chain A: N.99, S.306, N.308, P.318, S.335, I.336, E.337 Ligands: NAG.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.337 Hydrogen bonds: A:S.335 Water bridges: A:N.308, A:N.308, A:N.308 NAG.4: 4 residues within 4Å: Chain A: Y.468, Y.494, N.496, C.520 No protein-ligand interaction detected (PLIP) NAG.5: 7 residues within 4Å: Chain A: L.582, K.583, D.584, G.586, A.589, N.591, Q.605 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.583, A:D.584, A:D.584, A:N.591 NAG.6: 4 residues within 4Å: Chain A: S.97, N.99, E.337 Ligands: NAG.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thinn, A.M.M. et al., Autonomous conformational regulation of beta3integrin and the conformation-dependent property of HPA-1a alloantibodies. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-10-03

Peptides

Chimera protein of Integrin beta-3 and Integrin alpha-L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chimera protein of Integrin beta-3 and Integrin alpha-L