SMTL ID : 6bxr.1

Crystal structure of Toxoplasma gondii Mitochondrial Association Factor 1 B (MAF1B)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

11 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: S.20, H.21, H.22 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: D.31, P.32, A.33 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: N.46, A.47, P.135 Ligands: NA.12 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: P.76, E.77 Ligands: NA.13 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: P.98, V.122, V.123, L.126 Ligand excluded by PLIP BR.6: 4 residues within 4Å: Chain A: E.103, R.115, P.197, A.198 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain A: P.121, R.240 Ligand excluded by PLIP BR.8: 5 residues within 4Å: Chain A: P.124, G.125, E.130, P.135, N.136 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain A: S.176, A.229 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: N.194, P.243, N.244, F.245 Ligand excluded by PLIP BR.11: 6 residues within 4Å: Chain A: G.213, G.214, G.215, I.216, F.217 Ligands: NA.14 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.12: 2 residues within 4Å: Chain A: N.46 Ligands: BR.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.46 NA.13: 2 residues within 4Å: Chain A: G.52 Ligands: BR.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.52 Water bridges: A:G.52 NA.14: 5 residues within 4Å: Chain A: A.43, A.165, L.212, G.213 Ligands: BR.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.213 Water bridges: A:G.44, A:A.165

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 10 residues within 4Å: Chain A: F.16, F.17, Y.249, M.250, Y.251, D.252, N.255, A.256, A.257, L.258 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.17, A:Y.249, A:D.252, A:D.252, A:N.255, A:A.257, A:L.258 Water bridges: A:A.256 GOL.16: 8 residues within 4Å: Chain A: L.104, D.105, T.106, V.108, F.113, A.114, R.115, S.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.114, A:S.116 Water bridges: A:L.104, A:S.116 GOL.17: 4 residues within 4Å: Chain A: E.66, K.69, P.151, Y.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69, A:K.69, A:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blank, M.L. et al., A Toxoplasma gondii locus required for the direct manipulation of host mitochondria has maintained multiple ancestral functions. Mol. Microbiol. (2018)

Release Date

2018-12-19

Peptides

Mitochondrial association factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitochondrial association factor 1