SMTL ID : 6bz0.1 (1 other biounit)

1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Acinetobacter baumannii in Complex with FAD.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: I.13, G.14, G.15, G.16, P.17, G.18, I.36, E.37, K.38, R.39, G.49, T.50, C.51, V.54, G.55, C.56, S.59, K.60, G.122, T.123, G.124, A.152, S.153, G.154, S.155, S.173, I.194, R.281, Y.284, G.320, D.321, M.327, L.328, A.329, H.330, A.332, Y.360 Chain B: H.453, P.454 Ligands: CL.2 29 PLIP interactions: 27 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.50, A:I.194, A:I.194, A:I.194 Hydrogen bonds: A:G.15, A:G.16, A:G.18, A:G.19, A:K.38, A:R.39, A:T.50, A:T.50, A:C.51, A:K.60, A:G.124, A:G.124, A:S.155, A:D.321, A:M.327, A:A.329, B:H.453 Water bridges: A:K.38, A:K.38, A:G.49, A:G.154, A:L.322, A:A.332, B:H.453 pi-Cation interactions: A:K.38 FAD.7: 39 residues within 4Å: Chain A: H.453, P.454 Chain B: I.13, G.14, G.15, G.16, P.17, G.18, I.36, E.37, K.38, R.39, G.49, T.50, C.51, V.54, G.55, C.56, S.59, K.60, G.122, T.123, G.124, A.152, S.153, G.154, S.155, S.173, I.194, R.281, Y.284, G.320, D.321, M.327, L.328, A.329, H.330, A.332, Y.360 29 PLIP interactions: 27 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.50, B:I.194 Hydrogen bonds: B:G.15, B:G.18, B:G.19, B:K.38, B:R.39, B:T.50, B:T.50, B:T.50, B:C.51, B:K.60, B:G.124, B:G.124, B:S.155, B:D.321, B:M.327, B:A.329, A:H.453 Water bridges: B:G.16, B:G.16, B:E.37, B:G.49, B:G.154, B:S.155, B:L.322, B:A.332, A:H.453 pi-Cation interactions: B:K.38

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: S.173, I.194, R.281 Ligands: FAD.1 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: V.165, Q.167, V.171, D.172, G.175 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: D.223, K.224, T.371, E.372, E.373 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: L.219, P.220, M.221 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: L.297, T.298, E.299, R.300, G.301 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: D.223, K.224, T.371, E.372, E.373 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Acinetobacter baumannii in Complex with FAD. To Be Published

Release Date

2018-01-03

Peptides

Dihydrolipoyl dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydrolipoyl dehydrogenase

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