SMTL ID : 6bz5.1 (1 other biounit)

Structure and mechanism of salicylate hydroxylase from Pseudomonas putida G7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: T.150, Q.151 Ligand excluded by PLIP IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: R.381, W.420 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.278, E.279 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: K.181, R.185, P.199 Ligands: EDO.23 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: N.406, Q.408 Ligand excluded by PLIP

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 10 residues within 4Å: Chain A: G.65, V.66, S.67, L.336, P.337, G.340, A.341, G.342, A.343 Ligands: GOL.12 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.67, A:L.336, A:G.342, A:A.343 Water bridges: A:A.341, A:G.344 GOL.9: 7 residues within 4Å: Chain A: R.44, G.80, L.81, G.82, E.83, A.84, H.137 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.44, A:R.44, A:L.81, A:E.83, A:A.84 Water bridges: A:G.82 GOL.10: 6 residues within 4Å: Chain A: Q.51, F.53, K.147, F.163, E.168, Y.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.51, A:Q.51, A:K.147, A:E.168 GOL.11: 2 residues within 4Å: Chain A: Q.387, W.390 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.387 Water bridges: A:R.200, A:Q.387, A:E.391, A:E.391 GOL.12: 9 residues within 4Å: Chain A: A.64, S.67, L.244, F.246, V.257, P.337, G.340 Ligands: GOL.8, EDO.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.67, A:S.67 GOL.13: 4 residues within 4Å: Chain A: W.390, E.391, E.394, P.401 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.391 GOL.14: 4 residues within 4Å: Chain A: E.102, R.104, Y.111, H.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.102, A:R.104, A:R.104

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.15: 5 residues within 4Å: Chain A: G.60, E.61, K.181, P.275, W.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.60, A:W.276 EDO.16: 8 residues within 4Å: Chain A: S.67, F.101, M.235, L.244, P.337, H.338, G.340 Ligands: GOL.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.67, A:S.67 Water bridges: A:H.338 EDO.17: 5 residues within 4Å: Chain A: G.106, S.107, G.238, L.239, W.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.239 Water bridges: A:S.107 EDO.18: 4 residues within 4Å: Chain A: M.210, V.211, I.253, P.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.212 EDO.19: 5 residues within 4Å: Chain A: L.239, D.240, I.260, A.288, W.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.292 EDO.20: 3 residues within 4Å: Chain A: T.388, R.417, W.420 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.417 Water bridges: A:E.391, A:R.417, A:R.417 EDO.21: 5 residues within 4Å: Chain A: F.59, V.62, H.126, R.208, W.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.208, A:R.208 EDO.22: 4 residues within 4Å: Chain A: Y.85, L.86, A.89, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.85, A:A.89 EDO.23: 7 residues within 4Å: Chain A: S.182, R.185, S.186, L.189, P.196, Q.197 Ligands: IOD.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.182, A:R.185, A:S.186, A:Q.197

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.24: 7 residues within 4Å: Chain A: G.32, I.33, S.34, A.177, G.179, G.329, D.330 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.33, A:S.34, A:S.34, A:S.34, A:G.179, A:D.330 Water bridges: A:G.32, A:G.35, A:R.127, A:R.127, A:R.127, A:D.330, A:A.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Costa, D.M.A. et al., Catalytic mechanism for the conversion of salicylate into catechol by the flavin-dependent monooxygenase salicylate hydroxylase. Int.J.Biol.Macromol. (2019)

Release Date

2018-12-26

Peptides

Salicylate hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Salicylate hydroxylase

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