SMTL ID : 6bzh.1 (1 other biounit)

Structure of mouse RIG-I tandem CARDs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.76, D.80, C.91, E.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.95 EDO.4: 3 residues within 4Å: Chain B: S.2, S.3, E.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.2 EDO.5: 6 residues within 4Å: Chain B: K.53, E.57 Chain C: E.41, E.42, Y.45, Y.65 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Y.65, C:Y.65, B:K.53, B:K.53 EDO.6: 5 residues within 4Å: Chain C: Q.76, D.80, Y.83, C.91, E.95 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.95

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: N.171, V.175, L.178 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: N.138 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain D: R.18, K.22, S.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Cruz, A.A. et al., Identification of a second binding site on the TRIM25 B30.2 domain. Biochem. J. (2018)

Release Date

2018-01-17

Peptides

Probable ATP-dependent RNA helicase DDX58: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Probable ATP-dependent RNA helicase DDX58

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