SMTL ID : 6c1i.1

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x EEY: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide(Non-covalent)(Covalent)

EEY.1: 13 residues within 4Å: Chain A: F.81, C.84, R.87, S.88, A.91, H.122, I.125, L.129, H.248, L.252, L.268, Y.272 Ligands: KNA.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.81, A:F.81, A:R.87, A:I.125 Hydrogen bonds: A:C.84 Water bridges: A:R.87 pi-Stacking: A:H.248 EEY.3: 13 residues within 4Å: Chain B: F.81, C.84, Q.85, R.87, S.88, H.122, I.125, Y.126, L.129, F.162, H.248, L.252 Ligands: KNA.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.81, B:Q.85, B:I.125, B:F.162, B:F.162 Hydrogen bonds: B:S.88 Water bridges: B:R.87

2 x KNA: nonanoic acid(Non-covalent)

KNA.2: 8 residues within 4Å: Chain A: G.83, C.84, R.87, V.138, I.140, M.147, L.152 Ligands: EEY.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.87, A:V.138, A:I.140 KNA.4: 5 residues within 4Å: Chain B: I.80, G.83, C.84, M.163 Ligands: EEY.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brust, R. et al., A structural mechanism for directing corepressor-selective inverse agonism of PPAR gamma. Nat Commun (2018)

Release Date

2018-12-12

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma