SMTL ID : 6c1k.1

HypoPP mutant with ligand1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x GAI: GUANIDINE(Non-covalent)

GAI.1: 5 residues within 4Å: Chain A: M.47, E.50, R.117, R.123 Chain B: Q.168 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.168, A:R.117, A:R.117, A:R.123 Salt bridges: A:E.50 GAI.18: 5 residues within 4Å: Chain B: M.47, E.50, R.117, G.120, R.123 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.123, B:R.123 Salt bridges: B:E.50 GAI.26: 5 residues within 4Å: Chain C: M.47, E.50, R.117, R.123 Chain D: Q.168 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.117, C:R.117, C:R.123, D:Q.168 Salt bridges: C:E.50 GAI.43: 5 residues within 4Å: Chain D: M.47, E.50, R.117, G.120, R.123 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.123, D:R.123 Salt bridges: D:E.50

34 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PX4.2: 4 residues within 4Å: Chain A: S.52, T.54, F.55 Ligands: PX4.7 Ligand excluded by PLIP PX4.3: 18 residues within 4Å: Chain A: T.156, Y.160, T.180, L.181, G.182 Chain D: I.40, V.41, G.44, I.45, G.48, L.49, S.52, K.53, T.54, F.55, L.124 Ligands: PX4.4, PX4.14 Ligand excluded by PLIP PX4.4: 5 residues within 4Å: Chain A: S.150 Chain D: V.41, Q.133, M.134 Ligands: PX4.3 Ligand excluded by PLIP PX4.5: 7 residues within 4Å: Chain A: P.93, W.94, F.97, F.125, S.139, I.142 Chain B: F.158 Ligand excluded by PLIP PX4.6: 1 residues within 4Å: Chain A: F.100 Ligand excluded by PLIP PX4.7: 16 residues within 4Å: Chain A: I.40, V.41, G.44, I.45, G.48, S.52, K.53, T.54 Chain B: T.156, Y.160, T.180, L.181, G.182, F.185 Ligands: PX4.2, PX4.19 Ligand excluded by PLIP PX4.8: 4 residues within 4Å: Chain A: F.113 Chain B: Y.211, V.214 Ligands: PX4.20 Ligand excluded by PLIP PX4.9: 4 residues within 4Å: Chain A: V.41, Q.133, M.134 Chain B: S.150 Ligand excluded by PLIP PX4.10: 10 residues within 4Å: Chain A: M.148, F.189, M.192, L.194, M.227 Chain B: L.194, F.221, T.224, F.225 Ligands: PX4.14 Ligand excluded by PLIP PX4.14: 16 residues within 4Å: Chain A: M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227 Chain B: M.206, P.210, W.213, F.221 Ligands: PX4.3, PX4.10 Ligand excluded by PLIP PX4.15: 11 residues within 4Å: Chain B: I.115, L.122 Chain C: F.162, L.169, R.173, V.208, Y.209, Y.211, A.212, V.214 Ligands: PX4.16 Ligand excluded by PLIP PX4.16: 3 residues within 4Å: Chain B: F.113 Chain C: Y.211 Ligands: PX4.15 Ligand excluded by PLIP PX4.17: 6 residues within 4Å: Chain B: M.192 Chain C: L.194, F.221, T.224, F.225 Ligands: PX4.19 Ligand excluded by PLIP PX4.19: 15 residues within 4Å: Chain B: M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, M.227 Chain C: M.206, P.210, W.213, F.221 Ligands: PX4.7, PX4.17 Ligand excluded by PLIP PX4.20: 14 residues within 4Å: Chain A: I.115, L.119 Chain B: F.162, L.169, F.170, R.173, V.208, Y.209, Y.211, A.212, V.214, F.215, P.218 Ligands: PX4.8 Ligand excluded by PLIP PX4.21: 8 residues within 4Å: Chain B: P.93, W.94, F.97, F.125, S.139, I.142 Chain C: F.158, V.222 Ligand excluded by PLIP PX4.22: 1 residues within 4Å: Chain B: F.100 Ligand excluded by PLIP PX4.27: 4 residues within 4Å: Chain C: S.52, T.54, F.55 Ligands: PX4.32 Ligand excluded by PLIP PX4.28: 18 residues within 4Å: Chain B: I.40, V.41, G.44, I.45, G.48, L.49, S.52, K.53, T.54, F.55, L.124 Chain C: T.156, Y.160, T.180, L.181, G.182 Ligands: PX4.29, PX4.39 Ligand excluded by PLIP PX4.29: 5 residues within 4Å: Chain B: V.41, Q.133, M.134 Chain C: S.150 Ligands: PX4.28 Ligand excluded by PLIP PX4.30: 7 residues within 4Å: Chain C: P.93, W.94, F.97, F.125, S.139, I.142 Chain D: F.158 Ligand excluded by PLIP PX4.31: 1 residues within 4Å: Chain C: F.100 Ligand excluded by PLIP PX4.32: 16 residues within 4Å: Chain C: I.40, V.41, G.44, I.45, G.48, S.52, K.53, T.54 Chain D: T.156, Y.160, T.180, L.181, G.182, F.185 Ligands: PX4.27, PX4.44 Ligand excluded by PLIP PX4.33: 4 residues within 4Å: Chain C: F.113 Chain D: Y.211, V.214 Ligands: PX4.45 Ligand excluded by PLIP PX4.34: 4 residues within 4Å: Chain C: V.41, Q.133, M.134 Chain D: S.150 Ligand excluded by PLIP PX4.35: 10 residues within 4Å: Chain C: M.148, F.189, M.192, L.194, M.227 Chain D: L.194, F.221, T.224, F.225 Ligands: PX4.39 Ligand excluded by PLIP PX4.39: 16 residues within 4Å: Chain C: M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227 Chain D: M.206, P.210, W.213, F.221 Ligands: PX4.28, PX4.35 Ligand excluded by PLIP PX4.40: 11 residues within 4Å: Chain A: F.162, L.169, R.173, V.208, Y.209, Y.211, A.212, V.214 Chain D: I.115, L.122 Ligands: PX4.41 Ligand excluded by PLIP PX4.41: 3 residues within 4Å: Chain A: Y.211 Chain D: F.113 Ligands: PX4.40 Ligand excluded by PLIP PX4.42: 6 residues within 4Å: Chain A: L.194, F.221, T.224, F.225 Chain D: M.192 Ligands: PX4.44 Ligand excluded by PLIP PX4.44: 15 residues within 4Å: Chain A: M.206, P.210, W.213, F.221 Chain D: M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, M.227 Ligands: PX4.32, PX4.42 Ligand excluded by PLIP PX4.45: 14 residues within 4Å: Chain C: I.115, L.119 Chain D: F.162, L.169, F.170, R.173, V.208, Y.209, Y.211, A.212, V.214, F.215, P.218 Ligands: PX4.33 Ligand excluded by PLIP PX4.46: 8 residues within 4Å: Chain A: F.158, V.222 Chain D: P.93, W.94, F.97, F.125, S.139, I.142 Ligand excluded by PLIP PX4.47: 1 residues within 4Å: Chain D: F.100 Ligand excluded by PLIP

8 x NA: SODIUM ION(Non-functional Binders)

NA.11: 3 residues within 4Å: Chain A: W.177, G.200 Chain B: M.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.200 NA.12: 4 residues within 4Å: Chain A: E.176, W.177 Chain B: M.199, R.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.176 NA.23: 3 residues within 4Å: Chain B: W.177, G.200 Chain C: M.199 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.200 NA.24: 4 residues within 4Å: Chain B: E.176, W.177 Chain C: M.199, R.203 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.176 NA.36: 3 residues within 4Å: Chain C: W.177, G.200 Chain D: M.199 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.200 NA.37: 4 residues within 4Å: Chain C: E.176, W.177 Chain D: M.199, R.203 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.177 NA.48: 3 residues within 4Å: Chain A: M.199 Chain D: W.177, G.200 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.200 NA.49: 4 residues within 4Å: Chain A: M.199, R.203 Chain D: E.176, W.177 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.176

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 4 residues within 4Å: Chain A: F.174, P.175, E.176, W.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.176, A:W.177 SO4.25: 4 residues within 4Å: Chain B: F.174, P.175, E.176, W.177 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.176, B:W.177 SO4.38: 4 residues within 4Å: Chain C: F.174, P.175, E.176, W.177 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.176, C:W.177 SO4.50: 4 residues within 4Å: Chain D: F.174, P.175, E.176, W.177 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.176, D:W.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, D. et al., Structural basis for gating pore current in periodic paralysis. Nature (2018)

Release Date

2018-05-16

Peptides

Ion transport protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Membrane

We predict this structure to be a membrane protein.
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Ion transport protein

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