- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-tetramer
- Ligands
- 30 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 16 x 1N7: CHAPSO(Non-covalent)
1N7.4: 5 residues within 4Å:- Chain A: S.52, T.54, F.55, S.58
- Ligands: PX4.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.54, A:F.55
- Hydrogen bonds: A:S.52, A:S.52
1N7.5: 6 residues within 4Å:- Chain A: S.30, T.33, K.34, I.37, P.132, Q.133
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.34, A:I.37
1N7.6: 2 residues within 4Å:- Chain A: F.31, Y.38
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.31, A:Y.38
1N7.7: 3 residues within 4Å:- Chain A: F.59, Y.62, F.66
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.62, A:F.66
1N7.11: 6 residues within 4Å:- Chain D: S.52, T.54, F.55, S.58
- Ligands: PX4.1, PX4.24
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:T.54
- Hydrogen bonds: D:S.52, D:S.52, D:F.55
1N7.25: 6 residues within 4Å:- Chain B: S.30, T.33, K.34, I.37, P.132, Q.133
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:K.34, B:I.37
1N7.26: 3 residues within 4Å:- Chain B: F.31, K.34, Y.38
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.31, B:Y.38
1N7.27: 2 residues within 4Å:- Chain B: F.59, Y.62
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.59
1N7.35: 5 residues within 4Å:- Chain C: S.52, T.54, F.55, S.58
- Ligands: PX4.40
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:T.54, C:F.55
- Hydrogen bonds: C:S.52, C:S.52
1N7.36: 6 residues within 4Å:- Chain C: S.30, T.33, K.34, I.37, P.132, Q.133
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:K.34, C:I.37
1N7.37: 2 residues within 4Å:- Chain C: F.31, Y.38
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.31, C:Y.38
1N7.38: 3 residues within 4Å:- Chain C: F.59, Y.62, F.66
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.62, C:F.66
1N7.42: 6 residues within 4Å:- Chain B: S.52, T.54, F.55, S.58
- Ligands: PX4.32, PX4.55
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.54
- Hydrogen bonds: B:S.52, B:S.52, B:F.55
1N7.56: 6 residues within 4Å:- Chain D: S.30, T.33, K.34, I.37, P.132, Q.133
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:K.34, D:I.37
1N7.57: 3 residues within 4Å:- Chain D: F.31, K.34, Y.38
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.31, D:Y.38
1N7.58: 2 residues within 4Å:- Chain D: F.59, Y.62
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.59
- 4 x MGX: 1-METHYLGUANIDINE(Non-covalent)
MGX.8: 7 residues within 4Å:- Chain A: M.47, E.50, N.67, R.117, G.120, V.121, R.123
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.67, A:N.67, A:R.117, A:R.123, A:R.123
- Salt bridges: A:E.50
MGX.28: 6 residues within 4Å:- Chain B: M.47, E.50, N.67, R.117, G.120, R.123
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.67, B:R.117, B:R.123, B:R.123
- Salt bridges: B:E.50
MGX.39: 7 residues within 4Å:- Chain C: M.47, E.50, N.67, R.117, G.120, V.121, R.123
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.67, C:N.67, C:R.117, C:R.123, C:R.123
- Salt bridges: C:E.50
MGX.59: 6 residues within 4Å:- Chain D: M.47, E.50, N.67, R.117, G.120, R.123
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.67, D:R.117, D:R.123, D:R.123
- Salt bridges: D:E.50
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.12: 4 residues within 4Å:- Chain A: E.176, W.177
- Chain B: M.199, R.203
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.177
NA.13: 3 residues within 4Å:- Chain A: W.177, G.200
- Chain B: M.199
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.200
NA.29: 4 residues within 4Å:- Chain B: E.176, W.177
- Chain C: M.199, R.203
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.176
NA.30: 3 residues within 4Å:- Chain B: W.177, G.200
- Chain C: M.199
No protein-ligand interaction detected (PLIP)NA.43: 4 residues within 4Å:- Chain C: E.176, W.177
- Chain D: M.199, R.203
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.177
NA.44: 3 residues within 4Å:- Chain C: W.177, G.200
- Chain D: M.199
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.200
NA.60: 4 residues within 4Å:- Chain A: M.199, R.203
- Chain D: E.176, W.177
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.176
NA.61: 3 residues within 4Å:- Chain A: M.199
- Chain D: W.177, G.200
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.200
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.14: 3 residues within 4Å:- Chain A: R.173, V.208
- Ligands: PX4.46
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.173
SO4.31: 3 residues within 4Å:- Chain B: R.173, V.208
- Ligands: PX4.19
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.173
SO4.45: 3 residues within 4Å:- Chain C: R.173, V.208
- Ligands: PX4.15
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.173
SO4.62: 3 residues within 4Å:- Chain D: R.173, V.208
- Ligands: PX4.50
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.173
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jiang, D. et al., Structural basis for gating pore current in periodic paralysis. Nature (2018)
- Release Date
- 2018-05-16
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-tetramer
- Ligands
- 30 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 16 x 1N7: CHAPSO(Non-covalent)
- 4 x MGX: 1-METHYLGUANIDINE(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jiang, D. et al., Structural basis for gating pore current in periodic paralysis. Nature (2018)
- Release Date
- 2018-05-16
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B - Membrane
-
We predict this structure to be a membrane protein.