SMTL ID : 6c1p.1

HypoPP mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PO4.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

15 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PX4.2: 6 residues within 4Å: Chain A: G.48, S.52, T.54 Chain C: T.180, L.181 Ligands: PX4.13 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:T.180 Hydrogen bonds: C:L.181, C:G.182, A:T.54 PX4.3: 4 residues within 4Å: Chain A: F.170, Y.209, Y.211, A.212 No protein-ligand interaction detected (PLIP) PX4.4: 16 residues within 4Å: Chain A: I.152, M.155, T.156, F.159, G.182, E.183, F.185, Y.186, F.189, M.227 Chain C: M.206, P.210, W.213, I.217, F.221 Ligands: PX4.7 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:I.152, A:F.159, A:F.185, A:Y.186, A:F.189, C:W.213, C:W.213, C:I.217, C:I.217, C:F.221 Salt bridges: A:E.183 PX4.5: 15 residues within 4Å: Chain A: Y.211, W.213, F.221 Chain B: M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.192, M.227 Ligands: PX4.10 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.155, B:F.159, B:F.185, B:F.185, B:F.185, B:F.185, B:F.189, A:F.221 PX4.6: 2 residues within 4Å: Chain B: Q.133, M.134 No protein-ligand interaction detected (PLIP) PX4.7: 9 residues within 4Å: Chain A: T.180, G.182 Chain B: G.48, L.49, S.52, K.53, T.54 Ligands: PX4.4, PX4.8 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.49 Hydrogen bonds: B:K.53, B:T.54, B:T.54 PX4.8: 2 residues within 4Å: Chain B: S.52 Ligands: PX4.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.52, B:S.52 PX4.9: 7 residues within 4Å: Chain B: L.169, F.170, Y.209, Y.211, V.214 Chain D: F.113, I.115 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:F.113, B:L.169, B:F.170, B:V.214 Hydrogen bonds: B:Y.211 PX4.10: 8 residues within 4Å: Chain B: Y.160, T.180, L.181 Chain D: I.45, G.48, L.49 Ligands: PX4.5, PX4.18 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:I.45, D:L.49, B:L.181 PX4.12: 3 residues within 4Å: Chain C: S.52, T.54 Ligands: PX4.16 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.52 PX4.13: 14 residues within 4Å: Chain C: I.152, M.155, T.156, F.159, T.180, G.182, E.183, F.185, F.189, M.227 Chain D: M.206, P.210, W.213 Ligands: PX4.2 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.152, C:M.155, C:F.159, C:F.159, C:F.189 Salt bridges: C:E.183 PX4.15: 17 residues within 4Å: Chain B: M.206, P.210, W.213, I.217, F.221 Chain D: I.152, M.155, T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227 Ligands: PX4.16 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain D Hydrophobic interactions: B:W.213, B:F.221, D:I.152, D:M.155, D:F.159, D:F.159, D:F.185, D:F.189 Hydrogen bonds: D:E.183 Salt bridges: D:E.183 PX4.16: 14 residues within 4Å: Chain C: V.41, G.44, I.45, G.48, L.49, S.52, T.54, L.127 Chain D: Y.160, T.180, L.181, G.182 Ligands: PX4.12, PX4.15 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain C Hydrophobic interactions: D:Y.160, D:Y.160, D:L.181, C:V.41, C:I.45, C:L.49, C:L.127 Hydrogen bonds: D:G.182 PX4.17: 6 residues within 4Å: Chain D: R.173, V.208, Y.209, P.210, Y.211, A.212 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.173, D:Y.211 PX4.18: 2 residues within 4Å: Chain D: T.54 Ligands: PX4.10 No protein-ligand interaction detected (PLIP)

1 x 1N7: CHAPSO(Non-covalent)

1N7.11: 2 residues within 4Å: Chain C: R.173, Y.209 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, D. et al., Structural basis for gating pore current in periodic paralysis. Nature (2018)

Release Date

2018-05-16

Peptides

Ion transport protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Ion transport protein

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