SMTL ID : 6c1v.1 (1 other biounit)

MBD2 in complex with double-stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: S.40, P.41, S.42, Y.55 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: Q.51, R.54 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: C.11, P.12, L.14, P.15 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: D.35, V.36, R.68 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: F.46, Q.51, R.54, Y.55 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain A: Y.37, K.45, R.47 Chain C: A.4, G.5 Ligands: UNX.8 Ligand excluded by PLIP UNX.7: 8 residues within 4Å: Chain A: R.25, S.27, G.28, L.29, S.30, A.31 Chain C: T.6, G.7 Ligand excluded by PLIP UNX.8: 5 residues within 4Å: Chain A: V.23, Y.37 Chain C: G.5, T.6 Ligands: UNX.6 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: K.45, R.47, Q.51 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain B: S.27, G.28 Ligand excluded by PLIP UNX.11: 4 residues within 4Å: Chain B: S.40, P.41, S.42, Y.55 Ligand excluded by PLIP UNX.12: 1 residues within 4Å: Chain B: K.26 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain B: K.33 Chain D: T.9 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain B: E.22, S.34, R.68 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain B: R.25, S.34, D.35 Chain D: C.10 Ligand excluded by PLIP UNX.16: 4 residues within 4Å: Chain C: A.4, G.5, T.6 Chain D: T.9 Ligand excluded by PLIP UNX.17: 5 residues within 4Å: Chain C: G.5, T.6, G.7 Chain D: A.7, C.8 Ligand excluded by PLIP UNX.18: 5 residues within 4Å: Chain B: R.25, S.30 Chain C: G.2, G.3 Ligands: UNX.19 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain B: S.30 Chain C: G.2, G.3 Ligands: UNX.18 Ligand excluded by PLIP UNX.20: 1 residues within 4Å: Chain D: G.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA. J. Biol. Chem. (2018)

Release Date

2018-02-14

Peptides

Methyl-CpG-binding domain protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyl-CpG-binding domain protein 2

Related Entries With Identical Sequence