SMTL ID : 6c30.1

Mycobacterium smegmatis RimJ (apo form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: P.14, P.31, R.33, R.79 Chain B: R.21, V.26, W.216, A.218 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.21, B:W.216, A:R.79, A:R.79 Water bridges: B:A.218, A:R.33 GOL.2: 4 residues within 4Å: Chain A: D.95, E.97 Chain B: R.33, R.35 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.33, A:E.97 Water bridges: B:R.35, B:R.35, B:D.36, B:F.98, A:D.95, A:D.95, A:R.125 GOL.3: 7 residues within 4Å: Chain A: R.21, W.216, A.218 Chain B: P.14, P.31, V.32, R.79 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.21, A:R.21, B:V.32, B:R.79, B:R.79 Water bridges: A:A.218 GOL.7: 5 residues within 4Å: Chain B: R.150, E.152, L.177, Y.180, L.192 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.150, B:E.152, B:Y.180 Water bridges: B:N.106 GOL.8: 3 residues within 4Å: Chain A: R.35 Chain B: D.95, E.97 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.33, B:D.95, B:E.97 Water bridges: A:R.35, B:D.95, B:R.125, B:R.125 GOL.9: 5 residues within 4Å: Chain B: W.40, R.44, E.55, Q.101, W.120 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.40, B:E.55, B:Q.101, B:Q.101 Water bridges: B:T.103

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: G.129, I.130, A.131, T.132 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: V.26, W.216 Chain B: R.30, P.31, R.33 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: R.30, P.31, R.33 Chain B: V.26, W.216 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Favrot, L. et al., Structural Characterization of Mycobacterium smegmatis RimJ, an N-acetyltransferase protein. To Be Published

Release Date

2019-01-16

Peptides

GNAT family acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GNAT family acetyltransferase