SMTL ID : 6c3l.2 (1 other biounit)

Crystal structure of BCL6 BTB domain with compound 15f

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x EGP: N-[2-(1H-indol-3-yl)ethyl]-N'-{3-[(4-methylpiperazin-1-yl)methyl]-1-[2-(morpholin-4-yl)-2-oxoethyl]-1H-indol-6-yl}thiourea(Non-covalent)

EGP.1: 7 residues within 4Å: Chain A: M.53, A.54, C.55, G.57, Y.60, Q.115, E.117 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.60, A:Y.60 Hydrogen bonds: A:M.53 Water bridges: A:H.118 Salt bridges: A:E.117, A:E.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, H. et al., Identification of Thiourea-Based Inhibitors of the B-Cell Lymphoma 6 BTB Domain via NMR-Based Fragment Screening and Computer-Aided Drug Design. J.Med.Chem. (2018)

Release Date

2019-01-16

Peptides

B-cell lymphoma 6 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B-cell lymphoma 6 protein

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