SMTL ID : 6c4k.2 (1 other biounit)

Full length hUGDH with A104L substitution in the absence of ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: I.231, F.272, G.273, F.277, F.338, K.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.273, A:G.273 PO4.3: 6 residues within 4Å: Chain B: I.231, F.272, G.273, F.277, F.338, K.339 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.273, B:F.338 PO4.4: 7 residues within 4Å: Chain C: I.231, F.272, G.273, F.277, F.338, K.339, R.442 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.273, C:G.273, C:R.442 PO4.5: 6 residues within 4Å: Chain D: I.231, F.272, G.273, F.277, F.338, K.339 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.273, D:G.273 PO4.7: 6 residues within 4Å: Chain E: I.231, F.272, G.273, F.277, F.338, K.339 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.273, E:F.338 PO4.8: 7 residues within 4Å: Chain F: I.231, F.272, G.273, F.277, F.338, K.339, R.442 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:G.273, F:G.273, F:R.442

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain B: M.98 Chain C: R.312, S.316, Y.356 No protein-ligand interaction detected (PLIP) NA.6: 4 residues within 4Å: Chain E: M.98 Chain F: R.312, S.316, Y.356 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beattie, N.R. et al., Hysteresis and Allostery in Human UDP-Glucose Dehydrogenase Require a Flexible Protein Core. Biochemistry (2018)

Release Date

2018-05-16

Peptides

UDP-glucose 6-dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

UDP-glucose 6-dehydrogenase

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