SMTL ID : 6c57.1

Crystal structure of mutant human geranylgeranyl pyrophosphate synthase (Y246D) in complex with bisphosphonate inhibitor FV0109

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-dimer

Ligands

1 x FV9: {[(2-{3-[(4-fluorobenzene-1-carbonyl)amino]phenyl}thieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)(Non-covalent)

FV9.1: 13 residues within 4Å: Chain B: H.79, S.82, L.83, R.95, R.96, L.144, K.173, T.174, L.177, Q.207, D.210, D.211, K.234 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.83, B:T.174, B:L.177 Hydrogen bonds: B:R.95, B:R.95, B:K.173, B:Q.207, B:D.210, B:K.234 pi-Cation interactions: B:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lacbay, C.M. et al., Unraveling the Prenylation-Cancer Paradox in Multiple Myeloma with Novel Geranylgeranyl Pyrophosphate Synthase (GGPPS) Inhibitors. J. Med. Chem. (2018)

Release Date

2018-09-05

Peptides

Geranylgeranyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthase

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