SMTL ID : 6c5q.1

PPARg LBD bound to SR10171

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x EKS: 2-{3-[(5-{[(1S)-1-(4-tert-butylphenyl)ethyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]phenoxy}-2-methylpropanoic acid(Non-covalent)

EKS.1: 17 residues within 4Å: Chain A: I.66, F.68, G.88, C.89, F.91, R.92, S.93, A.96, I.130, M.133, L.134, L.137, I.145, S.146, M.168, Y.277 Ligands: EKS.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.66, A:F.68, A:F.91, A:F.91, A:F.91, A:R.92, A:R.92, A:I.130, A:L.134, A:L.137, A:I.145, A:I.145, A:Y.277, A:Y.277 Salt bridges: A:R.92 EKS.2: 18 residues within 4Å: Chain A: F.51, I.53, G.62, E.63, I.66, F.68, K.69, H.70, I.83, R.84, Q.87, G.88, I.145, S.146, M.152, L.269, Y.277 Ligands: EKS.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.51, A:I.53, A:I.66, A:F.68, A:H.70, A:I.83, A:R.84, A:Q.87, A:Q.87, A:I.145, A:L.269, A:Y.277 Salt bridges: A:H.70 pi-Stacking: A:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., PPAR gamma in Complex with an Antagonist and Inverse Agonist: a Tumble and Trap Mechanism of the Activation Helix. iScience (2018)

Release Date

2018-08-01

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma